Chinese Journal of Dermatology ›› 2017, Vol. 50 ›› Issue (3): 229-232.
Furong Zhang1,Yu Xu1, 1,yang guoling
Received:
2016-06-20
Revised:
2016-08-03
Online:
2017-03-15
Published:
2017-03-01
Contact:
yang guoling
E-mail:Yanggl@medmail.com.cn
Furong Zhang Yu Xu yang guoling. Application of metagenomic technologies in skin disease researches[J]. Chinese Journal of Dermatology, 2017, 50(3): 229-232.doi:
Add to citation manager EndNote|Reference Manager|ProCite|BibTeX|RefWorks
[1] | Kellenberger E. Exploring the unknown. The silent revolution of microbiology[J]. EMBO Rep, 2001, 2(1): 5⁃7. DOI: 10.1093/embo⁃reports/kve014. |
[2] | 田芳云, 黄婷婷, 黄光武, 等. 16 SrRNA基因序列分析在人体微生物组学研究中的进展及应用[J]. 中国老年学杂志, 2014, 34(8): 4396⁃4398. DOI: 10.3969/j.issn.1005⁃9202.2014.15.143. |
[3] | Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing[J]. Nature, 2010, 464(7285): 59⁃65. DOI: 10.1038/nature08821. |
[4] | Peterson J, Garges S, Giovanni M, et al. The NIH human microbiome project[J]. Genome Res, 2009, 19(12): 2317⁃2323. DOI: 10.1101/gr.096651.109. |
[5] | Williams MR, Gallo RL. The role of the skin microbiome in atopic dermatitis[J]. Curr Allergy Asthma Rep, 2015, 15(11): 65. DOI: 10.1007/s11882⁃015⁃0567⁃4. |
[6] | Abrahamsson TR, Jakobsson HE, Andersson AF, et al. Low diversity of the gut microbiota in infants with atopic eczema[J]. J Allergy Clin Immunol, 2012, 129(2): 434⁃440, 440.e1⁃2. DOI: 10.1016/j.jaci.2011.10.025. |
[7] | Cramer C, Link E, Horster M, et al. Elder siblings enhance the effect of filaggrin mutations on childhood eczema: results from the 2 birth cohort studies LISAplus and GINIplus[J]. J Allergy Clin Immunol, 2010, 125(6): 1254⁃1260.e5. DOI: 10.1016/j.jaci.2010. 03.036. |
[8] | Kong HH, Oh J, Deming C, et al. Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis[J]. Genome Res, 2012, 22(5): 850⁃859. DOI: 10.1101/gr.131029.111. |
[9] | Bourrain M, Ribet V, Calvez A, et al. Balance between beneficial microflora and Staphylococcus aureus colonisation: in vivo evaluation in patients with atopic dermatitis during hydrotherapy[J]. Eur J Dermatol, 2013, 23(6): 786⁃794. DOI: 10.1684/ejd.2013.2210. |
[10] | Seite S, Flores GE, Henley JB, et al. Microbiome of affected and unaffected skin of patients with atopic dermatitis before and after emollient treatment[J]. J Drugs Dermatol, 2014, 13(11): 1365⁃1372. |
[11] | Wang M, Karlsson C, Olsson C, et al. Reduced diversity in the early fecal microbiota of infants with atopic eczema[J]. J Allergy Clin Immunol, 2008, 121(1): 129⁃134. DOI: 10.1016/j.jaci.2007. 09.011. |
[12] | West CE, Rydén P, Lundin D, et al. Gut microbiome and innate immune response patterns in IgE⁃associated eczema[J]. Clin Exp Allergy, 2015, 45(9): 1419⁃1429. DOI: 10.1111/cea.12566. |
[13] | Song H, Yoo Y, Hwang J, et al. Faecalibacterium prausnitzii subspecies⁃level dysbiosis in the human gut microbiome underlying atopic dermatitis[J]. J Allergy Clin Immunol, 2016, 137(3): 852⁃860. DOI: 10.1016/j.jaci.2015.08.021. |
[14] | Leyden JJ, McGinley KJ, Mills OH, et al. Propionibacterium levels in patients with and without acne vulgaris[J]. J Invest Dermatol, 1975, 65(4): 382⁃384. |
[15] | Bek⁃Thomsen M, Lomholt HB, Scavenius C, et al. Proteome analysis of human sebaceous follicle infundibula extracted from healthy and acne⁃affected skin[J]. PLoS One, 2014, 9(9): e107908. DOI: 10.1371/journal.pone.0107908. |
[16] | Fitz⁃Gibbon S, Tomida S, Chiu BH,et al. Propionibacterium acnes strain populations in the human skin microbiome associated with acne[J]. J Invest Dermatol, 2013, 133(9): 2152⁃2160. DOI: 10.1038/jid.2013.21. |
[17] | Liu J, Yan R, Zhong Q, et al. The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin[J]. ISME J, 2015, 9(9): 2078⁃2093. DOI: 10.1038/ismej.2015.47. |
[18] | Murillo N, Aubert J, Raoult D. Microbiota of Demodex mites from rosacea patients and controls[J]. Microb Pathog, 2014, 71⁃72: 37⁃40. DOI: 10.1016/j.micpath.2014.04.002. |
[19] | Holmes AD. Potential role of microorganisms in the pathogenesis of rosacea[J]. J Am Acad Dermatol, 2013, 69(6): 1025⁃1032. DOI: 10.1016/j.jaad.2013.08.006. |
[20] | Murillo N, Raoult D. Skin microbiota: overview and role in the skin diseases acne vulgaris and rosacea[J]. Future Microbiol, 2013, 8(2): 209⁃222. DOI: 10.2217/fmb.12.141. |
[21] | Picardo M, Ottaviani M. Skin microbiome and skin disease: the example of rosacea[J]. J Clin Gastroenterol, 2014, 48 Suppl 1: S85⁃86. DOI: 10.1097/MCG.0000000000000241. |
[22] | Swe PM, Zakrzewski M, Kelly A, et al. Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model[J]. PLoS Negl Trop Dis, 2014, 8(5): e2897. DOI: 10.1371/journal.pntd.0002897. |
[23] | Mofiz E, Seemann T, Bahlo M, et al. Mitochondrial genome sequence of the Scabies Mite provides insight into the genetic diversity of individual scabies infections[J]. PLoS Negl Trop Dis, 2016, 10(2): e0004384. DOI: 10.1371/journal.pntd.0004384. |
[24] | Hannigan GD, Meisel JS, Tyldsley AS, et al. The human skin double⁃stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome[J]. MBio, 2015, 6(5): e01578⁃01515. DOI: 10.1128/mBio.01578⁃15. |
[25] | Bzhalava D, Johansson H, Ekström J, et al. Unbiased approach for virus detection in skin lesions[J]. PLoS One, 2013, 8(6): e65953. DOI: 10.1371/journal.pone.0065953. |
[26] | Ekström J, Bzhalava D, Svenback D, et al. High throughput sequencing reveals diversity of human papillomaviruses in cutaneous lesions[J]. Int J Cancer, 2011, 129(11): 2643⁃2650. DOI: 10.1002/ijc.26204. |
[27] | Bzhalava D, Mühr LS, Lagheden C, et al. Deep sequencing extends the diversity of human papillomaviruses in human skin[J]. Sci Rep, 2014, 4: 5807. DOI: 10.1038/srep05807. |
[28] | Balci DD, Duran N, Ozer B, et al. High prevalence of Staphy⁃lococcus aureus cultivation and superantigen production in patients with psoriasis[J]. Eur J Dermatol, 2009, 19(3): 238⁃242. DOI: 10.1684/ejd.2009.0663. |
[29] | Weisenseel P, Prinz JC. Incidental detection of S. pyogenes⁃DNA in psoriatic skin by PCR[J]. Arch Dermatol Res, 2005, 296(12): 573⁃576. DOI: 10.1007/s00403⁃005⁃0559⁃7. |
[30] | Gao Z, Tseng CH, Strober BE, et al. Substantial alterations of the cutaneous bacterial biota in psoriatic lesions[J]. PLoS One, 2008, 3(7): e2719. DOI: 10.1371/journal.pone.0002719. |
[31] | Fahlén A, Engstrand L, Baker BS, et al. Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin[J]. Arch Dermatol Res, 2012, 304(1): 15⁃22. DOI: 10.1007/s00403⁃011⁃1189⁃x. |
[32] | Paulino LC, Tseng CH, Strober BE, et al. Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions[J]. J Clin Microbiol, 2006, 44(8): 2933⁃2941. DOI: 10.1128/JCM.00785⁃06. |
[33] | Ranganathan S, Mukhopadhyay T. Dandruff: the most commercially exploited skin disease[J]. Indian J Dermatol, 2010, 55(2): 130⁃134. DOI: 10.4103/0019⁃5154.62734. |
[34] | Clavaud C, Jourdain R, Bar⁃Hen A, et al. Dandruff is associated with disequilibrium in the proportion of the major bacterial and fungal populations colonizing the scalp[J]. PLoS One, 2013, 8(3): e58203. DOI: 10.1371/journal.pone.0058203. |
[35] | Wang L, Clavaud C, Bar⁃Hen A, et al. Characterization of the major bacterial⁃fungal populations colonizing dandruff scalps in Shanghai, China, shows microbial disequilibrium[J]. Exp Dermatol, 2015, 24(5): 398⁃400. DOI: 10.1111/exd.12684. |
[36] | Park HK, Ha MH, Park SG, et al. Characterization of the fungal microbiota (mycobiome) in healthy and dandruff⁃afflicted human scalps[J]. PLoS One, 2012, 7(2): e32847. DOI: 10.1371/journal.pone.0032847. |
[37] | Frank DN, Wysocki A, Specht⁃Glick DD, et al. Microbial diversity in chronic open wounds[J]. Wound Repair Regen, 2009, 17(2): 163⁃172. DOI: 10.1111/j.1524⁃475X.2009.00472.x. |
[38] | Gardner SE, Hillis SL, Heilmann K, et al. The neuropathic diabetic foot ulcer microbiome is associated with clinical factors[J]. Diabetes, 2013, 62(3): 923⁃930. DOI: 10.2337/db12⁃0771. |
[39] | Sprockett DD, Ammons CG, Tuttle MS. Use of 16S rRNA sequen⁃cing and quantitative PCR to correlate venous leg ulcer bacterial bioburden dynamics with wound expansion, antibiotic therapy, and healing[J]. Wound Repair Regen, 2015, 23(5): 765⁃771. DOI: 10.1111/wrr.12309. |
[40] | James AG, Austin CJ, Cox DS, et al. Microbiological and biochemical origins of human axillary odour[J]. FEMS Microbiol Ecol, 2013, 83(3): 527⁃540. DOI: 10.1111/1574⁃6941.12054. |
[41] | Callewaert C, Kerckhof FM, Granitsiotis MS, et al. Characterization of Staphylococcus and Corynebacterium clusters in the human axillary region[J]. PLoS One, 2013, 8(8): e70538. DOI: 10.1371/journal.pone.0070538. |
[42] | Troccaz M, Gaïa N, Beccucci S, et al. Mapping axillary microbiota responsible for body odours using a culture⁃independent approach[J]. Microbiome, 2015, 3(1): 3. DOI: 10.1186/s40168⁃014⁃0064⁃3. |
[43] | Li W, Han L, Yu P, et al. Molecular characterization of skin microbiota between cancer cachexia patients and healthy volunteers[J]. Microb Ecol, 2014, 67(3): 679⁃689. DOI: 10.1007/ s00248⁃013⁃0345⁃6. |
No related articles found! |
|