中华皮肤科杂志 ›› 2013, Vol. 46 ›› Issue (5): 324-327.

• 论著 • 上一篇    下一篇

尿液标本淋球菌多抗原序列分型研究

陈绍椿1,尹跃平2,施美琴3,戴秀芹4,韩燕4,王宝玺5,陈祥生6   

  1. 1. 中国医学科学院皮肤病研究所,中国疾病预防控制中心性病控制中心
    2. 南京 中国医学科学院北京协和医学院皮肤病研究所
    3. 南京医科院皮研所
    4. 中国医学科学院皮肤病研究所
    5. 中国医学科学院北京协和医学院整形外科医院
    6. 医科院皮研所
  • 收稿日期:2012-06-06 修回日期:2012-07-09 出版日期:2013-05-15 发布日期:2013-05-01
  • 通讯作者: 尹跃平 E-mail:yinyp@ncstdlc.org
  • 基金资助:
    penA 基因突变及mtrR、penB 基因的协同作用与淋球菌产生头孢曲松耐药的相关性研究;国家十一五“艾滋病和病毒性肝炎等重大传染病防治”科技重大专项“防治性病对预防艾滋病的作用研究”

Neisseria gonorrhoeae multi-antigen sequence typing using urine samples

  • Received:2012-06-06 Revised:2012-07-09 Online:2013-05-15 Published:2013-05-01
  • Contact: Yue-ping YIN E-mail:yinyp@ncstdlc.org

摘要: 【摘要】 目的 探讨江苏常州、扬州,广西梧州、贺州,海南三亚、琼海,广东江门、茂名淋球菌多抗原序列分型(NG-MAST)的型别分布。方法 88份淋球菌核酸检测阳性的男性性病门诊就诊者(MSP)的尿液标本,用Qiagen试剂盒提取DNA,并进行2次PCR扩增porB、tbpB基因片段,扩增成功的标本测序后登陆NG-MAST网站进行序列比对,获取菌株基因型别信息。 结果 对88份阳性标本提取DNA进行单次PCR,扩增porB、tbpB基因的效率分别为13.6%和14.8%,共有12份标本比对成功,得到菌株基因型别,分型效率为13.6%(12/88);进行2次PCR扩增后,porB、tbpB基因的PCR扩增效率分别为71.6%和72.7%,分别增长了58.0%和57.9%,共有62份标本比对成功得到菌株基因型别,分型效率为70.5%(62/88),分型效率提高了56.9%。62份标本共分出45个基因型,其中40个型为已知型别,5个为新型别。所有型别中,ST1866型丰度最高,有6份标本为此型别,ST1972、ST3356各有4份标本,都集中于江苏项目点。ST532有3份,集中于广东项目点。ST2221有2份,集中于广西项目点,其余各基因型均只有1份标本,散在分布于各省。5个新型别为:porB基因型为892、tbpB基因型98%相似于46型的标本,且丰度较高,仅发现于江苏项目点;porB基因型为903、tbpB基因型99%相似于958型;porB基因型为130、tbpB基因型96% 相似于504型;porB基因型为2790、tbpB基因型99%相似于32型;porB基因型为1053、tbpB基因型99%相似于856型。结论 尿液标本可以用于NG-MAST分型研究,2次PCR扩增可以提高尿液标本的分型效率,不同地区淋球菌NG-MAST型别表现为多样性。 【关键词】 奈瑟球菌,淋病; 基因型; 淋球菌多抗原序列分型

关键词: 奈瑟球菌,淋病, 淋球菌多抗原序列分型, 基因型

Abstract: CHEN Shao-chun, YIN Yue-ping, SHI Mei-qin, DAI Xiu-qin, HAN Yan, WANG Bao-xi, CHEN Xiang-sheng. Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College; National Center for Sexually Transmitted Disease Control, Chinese Center for Disease Control and Prevention, Nanjing 210042, China Corresponding author: YIN Yue-ping, Email: yinyp@ncstdlc.org 【Abstract】 Objective To determine Neisseria gonorrhoeae multi-antigen sequence typing (NG-MAST) sequence types in different geographical areas of China, including Changzhou and Yangzhou cities of Jiangsu province, Wuzhou and Hezhou cities in Guangxi Zhuang Autonomous region, Sanya and Qionghai cities of Hainan province, Jiangmen and Maoming cities of Guangdong province. Methods DNA was extracted using Qiagen DX extraction kits from 88 urine samples which were collected from male patients attending sexually transmitted disease (STD) clinics and positive for nucleic acid amplification test (NAAT) for N. gonorrhoeae. Two rounds of PCR were carried out to amplify the porB and tbpB genes of N. gonorrhoeae followed by gene sequencing. Sequence alignment was performed on the NG-MAST website (http://www.ng-mast.net) to determine the genotype of N. gonorrhoeae. Results The first-round PCR yielded positive results for porB and tbpB in 13.6% (12/88) and 14.8% (13/88), respectively, of these urine specimens, and 12 samples were successfully genotyped with the efficiency of genotyping being 13.6%. The amplification efficiency of second-round PCR was enhanced to 71.6% and 72.7% for porB and tbpB, respectively, and the efficiency of genotyping increased to 70.5% (62/88). Compared with the first-round PCR, the second-round PCR showed an increase in amplification efficiency for porB and tbpB by 58.0% and 57.9% respectively, as well as in genotyping efficiency by 56.9%. Forty-five genotypes were identified in the 62 samples, including 40 known genotypes and 5 novel genotypes. Of these genotypes, ST1866 was the most abundant (6/62), followed by ST1972 (4/62) and ST3356 (4/62), all of which were from Jiangsu province. The ST532 genotype was identified in 3 samples from Guangdong province, ST2221 genotype in 2 samples from Guangxi Zhuang Autonomous region. Each of the remaining genotypes was identified in only 1 sample and scattered in all of these cities. The 5 novel MAST-genotypes were as follows: porB-892 and tbpB-46 (98% similarity), porB-130 and tbpB-504 (96% similarity), porB-2790 and tbpB-32 (99% similarity), porB-1053 and tbpB-856 (99% similarity). Conclusions Urine samples can be used for NG-MAST analysis, and two rounds of PCR can enhance the efficiency of genotyping. NG-MAST genotypes appear to be diverse in different geographical areas of China. 【Key words】 Neisseria gonorrhoeae; Genotype; Neisseria gonorrhoeae multi-antigen sequence typing

中图分类号: 

  • R759